Publications

You can find the complete publication list on my Google Scholar profile.

EVE is an open modular data analysis software for event-based localization microscopy Laura M. Weber‡, Koen J.A. Martens‡, Clément Cabriel, Joel J. Gates, Manon Albecq, Fredrik Vermeulen, Katarina Hein, Ignacio Izeddin, Ulrike Endesfelder Published in bioRxiv, August 2024 (see publication in Journal ) Methods

Live-cell imaging reveals the trade-off between target search flexibility and efficiency for Cas9 and Cas12a Lorenzo Olivi, Cleo Bagchus, Victor Pool, Ezra Bekkering, Konstantin Speckner, Hidde Offerhaus, Wen Y Wu, Martin Depken, Koen J.A. Martens, John van der Oost, Raymond H.J. Staals, Johannes Hohlbein' Published in Nucleic Acid Research, April 2024 (see publication in Journal ) Paper

Temporal analysis of relative distances (TARDIS) is a robust, parameter-free alternative to single-particle tracking Koen J.A. Martens, Bartosz Turkowyd, Johannes Hohlbein, Ulrike Endesfelder Published in Nature Methods, January 2024 (see publication in Journal ) Methods

Enabling Spectrally Resolved Single-Molecule Localization Microscopy at High Emitter Densities Koen J.A. Martens, Martijn Gobes, Emmanouil Archontakis, Roger R. Brillas, Niels Zijlstra, Lorenzo Albertazzi, and Johannes Hohlbein Published in Nano Letters, October 2022 (see publication in Journal ) Methods

Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule localization microscopy Koen J.A. Martens, Bartosz Turkowyd, Ulrike Endesfelder Published in Frontiers in Bioinformatics, December 2021 (see publication in Journal ) Methods

Integrating engineered point spread functions into the phasor-based single-molecule localization microscopy framework Koen J.A. Martens, Abbas Jabermoradi, Suyeon Yang, Johannes Hohlbein Published in Methods, September 2020 (see publication in Journal ) Methods

Spatiotemporal Heterogeneity of κ-Carrageenan Gels Investigated via Single-Particle-Tracking Fluorescence Microscopy Koen J. A. Martens, John van Duynhoven, and Johannes Hohlbein Published in Langmuir, April 2020 (see publication in Journal ) Paper

Direct Visualization of Native CRISPR Target Search in Live Bacteria Reveals Cascade DNA Surveillance Mechanism Jochem N.A. Vink, Koen J.A. Martens, Marnix Vlot, Rebecca E. McKenzie, Cristóbal Almendros, Boris Estrada Bonilla, Daan J.W. Brocken, Johannes Hohlbein, Stan J.J. Brouns Published in Molecular Cell, January 2020 (see publication in Journal ) Paper

Visualisation of dCas9 target search in vivo using an open-microscopy framework Koen J. A. Martens, Sam P. B. van Beljouw, Simon van der Els, Jochem N. A. Vink, Sander Baas, George A. Vogelaar, Stan J. J. Brouns, Peter van Baarlen, Michiel Kleerebezem & Johannes Hohlbein Published in Nature Communications, August 2019 (see publication in Journal ) Paper

Evaluating single-particle tracking by photo-activation localization microscopy (sptPALM) in Lactococcus lactis Sam P B van Beljouw, Simon van der Els, Koen J A Martens, Michiel Kleerebezem, Peter A Bron and Johannes Hohlbein Published in Physical Biology, March 2019 (see publication in Journal ) Paper

Manipulation of Recrystallization and Network Formation of Oil-Dispersed Micronized Fat Crystals Tatiana Nikolaeva, Ruud den Adel, Ruud van der Sman, Koen J. A. Martens, Henk Van As, Adrian Voda, and John van Duynhoven Published in Langmuir, January 2019 (see publication in Journal ) Paper

Quantitative Structural Analysis of Fat Crystal Networks by Means of Raman Confocal Imaging Koen J. A. Martens, Gerard van Dalen, Patricia C. M. Heussen, Mihai A. Voda, Tatiana Nikolaeva, John P. M. van Duynhoven Published in Journal of the American Oil Chemists' Society, February 2018 (see publication in Journal ) Paper

Phasor based single-molecule localization microscopy in 3D (pSMLM-3D): An algorithm for MHz localization rates using standard CPUs Koen J. A. Martens, Arjen N. Bader, Sander Baas, Bernd Rieger, and Johannes Hohlbein Published in Journal of Chemical Physics, December 2017 (see publication in Journal ) Paper, Methods